GenoBase

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Image chart of GenoBase ( PDF 3.7MB )

Contact Us	ecoli_admin@gtc.naist.jp
What's GenoBase	Introduction Update history E-coli newsletter
Search Tools	by keyword ( JW , ECK , Gene_name , biogical keywords ) by homology ( DNA sequence , Amino acid sequence / blastn , blastp , blastx , tblastn , tblastx ) CategoricalSearch ( ORF , RNA , Transcription / DNA Size (bp) , Genomic region(bp) , Genomic region(min) ) Clip Sequence ( Input Start/End position (1 .. 4646332 ) ) Convert Sequence ( Input DNA Sequence ) Search Position ( blastn / Input DNA Sequence ) Search Position Exact Match ( Input DNA Sequence ) Sequence Assignment ( DNA seqence : use one letter (AGCT) , Amino acid Sequence : use one letter (ACDEFGHIKLMNPQRSTVWY) ) Query bySQL ( Enter a query ) Referenece Search ( We collected about 5,000 paper's information now / gene_name )
Download Service	Resource Information ASKA description ASKA clone information sorted by JW id ASKA clone information sorted by stock position Keio collection description Keio collection information Cloning vector pCA24N FAQ on the Resource Feed Back Information on the Resource ORF Sequence etc.. W3110 (fasta format) Tabulated ORF list ORF nucleotide seqs (fasta format) sorted by ECK_No. ORF amino acid seqs (fasta format) sorted by ECK_No. RNA seqs (fasta format) sorted by ECK_No. ORFs in genbank format (plain text)
Resources	Genome sequence Genes / ORFs tRNA / rRNA / other RNAs Sequence elements Kohara clones ASKA library (A complete Set of E.coli K-12 ORF Archive) Keio collection (Systematic single-gene knock-out mutants of E.coli K-12) FAQ on the Resource Request Resources Resource request and shipping status Necessary cost
Our Achievements	Systematic microarray analyses - E. coli gene classification by Self Organizing Map - 2 Component system - dam 2D Proteome Protein expression from ASKA clone Protein Localization
Links	E-coli-related / Bacteriology

	Resource comments and questions can be posted on the EcoliHub Forum.